Developed and maintained by
Department of Ecology and Evolution, Biophore, Lausanne University, CH-1015 Lausanne, Switzerland.
Evolutionary Bioinformatics group.
Evolutionary Bioinformatics group.
License
The Selectome dataset is licensed under a Privacy Notice
References and Related works
- Selectome update: quality control and computational improvements to a database of positive selection
Sébastien Moretti, Balazs Laurenczy, Walid H. Gharib, Briséïs Castella, Arnold Kuzniar, Hannes Schabauer, Romain A. Studer, Mario Valle, Nicolas Salamin, Heinz Stockinger, Marc Robinson-Rechavi
Nucleic Acids Res., 2014; 42(Database issue):D917-D921. [RIS] - Selectome: a Database of Positive Selection
Estelle Proux (*), Romain A. Studer (*), Sébastien Moretti (*), Marc Robinson-Rechavi
Nucleic Acids Res., 2009; 37(Database issue):D404-D407. [RIS]
*: equal contribution.
- Patterns of Positive Selection in Seven Ant Genomes
Julien Roux, Eyal Privman, Sébastien Moretti, Josephine T. Daub, Marc Robinson-Rechavi, Laurent Keller
Mol Biol Evol, 2014; 31():1661-1685. [RIS] - Optimisation strategies for fast detection of positive selection on phylogenetic trees (FastCodeML)
Mario Valle, Hannes Schabauer, Christoph Pacher, Heinz Stockinger, Alexandros Stamatakis, Marc Robinson-Rechavi, Nicolas Salamin
Bioinformatics, 2014; 30(8):1129-1137. [RIS] - SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model
Hannes Schabauer, Mario Valle, Christoph Pacher, Heinz Stockinger, Alexandros Stamatakis, Marc Robinson-Rechavi, Ziheng Yang, Nicolas Salamin
HiCOMB (IEEE International Workshop on High Performance Computational Biology), 2012; 11:706-714. [RIS] - gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution
Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger
In Healthgrid Applications and Core Technologies - Proceedings of HealthGrid 2012
Studies in Health Technology and Informatics, 2012; 175:59-68. [RIS] - Phylogenetic Code in the Cloud - Can it Meet the Expectations?
Adam Kraut, Sébastien Moretti, Marc Robinson-Rechavi, Heinz Stockinger, Dean Flanders
In Healthgrid Applications and Core Technologies - Proceedings of HealthGrid 2010
Studies in Health Technology and Informatics, 2010; 159:55-63. [RIS] - Pervasive positive selection on duplicated and non duplicated vertebrate protein coding genes
Romain Studer, Simon Penel, Laurent Duret, Marc Robinson-Rechavi
Genome Res., 2008; 18(9):1393-1402. Supplementary Data [RIS]
Funding sources
 | University of Lausanne, Department of Ecology and Evolution |
 | Swiss Platform for High-Performance and High-Productivity Computing |
 | Swiss Multi-Science Computing Grid |
Acknowledgements
The computations were performed at the Vital-IT (https://www.vital-it.ch) Center for high-performance computing of the SIB Swiss Institute of Bioinformatics.
As well as on the SMSCG (Swiss Multi-Science Computing Grid) infrastructure with the GC3pie/gcodeml submission tool.
As well as on the SMSCG (Swiss Multi-Science Computing Grid) infrastructure with the GC3pie/gcodeml submission tool.